HIGHLIGHTS
Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel ageing genes
We design a “wisdom-of-the-crowds” GRN inference pipeline, and couple it to complex network analysis, to understand the organisational principles governing gene regulation in long-lived glp-1/Notch C. elegans. The GRN has three layers (input, core, output) and is topologically equivalent to bow-tie/hourglass structures prevalent among metabolic networks. To assess the functional...
Node Metadata Can Produce Predictability Crossovers in Network Inference Problems
Network inference is the process of learning the properties of complex networks from data. Besides using information about known links in the network, node attributes and other forms of network metadata can help solve network inference problems. Indeed, several approaches have been proposed to introduce metadata into probabilistic network models...
Bayesian machine scientist to compare data collapses for the Nikuradse dataset
Phys. Rev. Lett. - Feb. 27, 2020
Ever since Nikuradse’s experiments on turbulent friction in 1933, there have been theoretical attempts to describe his measurements by collapsing the data into single-variable functions. However, this approach, which is common in other areas of physics and in other fields, is limited by the lack of rigorous quantitative methods to...
OUR RESEARCH
Complex Systems
Cells, ecosystems and economies are examples of complex systems. In complex systems, individual components interact with each other, usually in nonlinear ways, giving rise to complex networks of interactions that are neither totally regular nor totally random. Partly because of the interactions themselves and partly because of the interaction's topology, complex systems cannot be properly understood by just analyzing their constituent parts.
Data Science
Humans generate information at an unprecedented pace, with some estimates suggesting that, in a year, we now produce on the order of 10^21 bytes of data, millions of times the amount of information in all the books ever written. Processing this "data deluge", as some have called it, requires new tools and new approaches at the interface of statistics, statistical and machine learning, network theory and statistical physics.
Multidisciplinarity
Our goal is to push forward the boundaries of science. We are interested in addressing fundamental questions in all areas of science including natural, social and economic sciences. We put a special emphasis in the development of tools that aid scientific discovery through understanding and quantification of a specific phenomenon. To this end we have assembled a multidisciplinary team and have established solid collaborations with experts in biology, social sciences, ecology and economics.