DOWNLOADS

Code

Network cartography - Netcarto

Given a network, the program identifies modules (densely connected groups of nodes in the network) and classifies nodes according to their roles.

Network C libraries - RGraph

Source code of the C libraries for a variety of network calculations, including community finding using simulated annealing, network cartography, and link and network reliability.

Bipartite modularity - Bipartmod

Module identification in bipartite and directed networks. Given a bipartite (or directed) network, the program returns a partition into groups of the nodes in one of the sets of nodes (the 'actors' or the 'teams').

DRUGraph

A network inference method for large-scale unsupervised identification of novel drug-drug interactions.

Bayesian machine scientist

A Python implementation of the Bayesian machine scientist.

Datasets

Drug-drug interactions

These are the drug-drug interaction datasets used in our PLOS Computational Biology paper of 2013.

Air transportation networks

Air transportation network datasets, with city identifiers and coordinates

Long-term email network data

Undirected email correspondence between users of a large organization with over 1,000 individuals for four consecutive years (2007-2010)

Network datasets for perturbation reconstruction

A set of networks for studying the reconstruction of perturbation propagation paths.

Email network

List of edges of the network of email exchanges between members of an organization.